Hybrid ENIGMA meeting, June, 28th-30th 2024
Riga, Latvia
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Day 1: Introductory Session - Chairs Amanda Spurdle and Maaike Vreeswijk
Welcome, thanks, housekeeping – Mandy, Maaike, Arvids, Zanda (slides – presentation)
CIMBA plus Report and discussion – Amanda Spurdle (slides – presentation)
Integration of Protein Stability and Structural Context Scores Improves Bioinformatic Predictions for BRCA1 and TP53 Variants – Miguel de la Hoya, Nitsan Rotenberg (slides – presentation)
Update – ClinGen Hereditary Breast Ovarian Pancreatic Cancer Variant Curation Expert Panel. Progress on CHEK2 rules – Marcy Richardson (slides – presentation)
Update – ClinGen ENIGMA BRCA1/2 Variant Curation Expert Panel Progress – old classifications using new rules, priority classifications for ClinVar variants etc – Michael Parsons (slides – presentation)
ENIGMA BRCA1/2 VCEP UCSC tracks – Anna Benet-Pages (virtual), Melissa Cline (slides – presentation)
Development of an automated variant classification algorithm in Hereditary Breast and Ovarian Cancer – Ana-Lena Katzke (slides – presentation)
ClinGen ACMG/AMP V4.0 – Sean Tavtigian (slides – presentation)
Day 1: Clinical Working Group - Chairs Arcangela De Nicolo & Joanne Ngeow
Vocabulary Translation Project (VTP) – Arcangela De Nicolo (slides – presentation)
Clinical and molecular studies of BRCA1, BRCA2, PALB2 variants identified in Fanconi Anemia patients – Amanda Spurdle (slides – presentation)
BRCA2 c.8351G>A p.(Arg2784Gln): a variant with reduced penetrance? – Encarna Gomez-Garcia (slides also contributed by David Goldgar and Kyriaki Michailidou) (slides – presentations)
CHEK2 and hematological diseases (literature review and study proposal) – Encarna Gomez-Garcia (slides also contributed by Zdenek Kleibl and Petra Kleiblova) (slides – presentation)
CHEK2 Clinical Practice Resource (and PRS) – Paul James (virtual) (slides – presentation)
Gaining insights into platinum and PARPi resistance (study update and planned analyses) – Banu Arun (slides – presentation)
HRD and type of peritoneal tumor spread: two (independent?) markers for survival in ovarian cancer – Simon Schnaiter (slides – presentation)
HBOC risk population screening: results communicated via digital platform (report on a pilot study) and Management of BRCA1 and BRCA2 (L)P carriers at the Breast Unit of the Paul Stradiņš Clinical University Hospital – Arvids Irmejs (slides – presentation)
Day 2: Pathology Working Group - Chairs Melissa Southey & Mads Thomassen
Introduction to PWG Project updates: Mads Thomassen and Melissa Southey (slides – presentation)
Analytical strategies and technical points of AI studies of histopathology: application to variant classification – Nicolas Viart (slides – presentation)
HRD methods – Inge Søkilde Pedersen (slides – presentation)
ShallowHRD – Louise Adel Jensen (slides – presentation)
RAD51 assay as biomarker for functional HR: Progress update – Joanna Domenech Vivo / Sara Gutierrez-Enriquez (slides – presentation)
Resources the PWG could consider for molecular pathology studies – Melissa Southey (slides – presentation)
Day 2: Analytic Working Group - Chairs David Goldgar and Kyriaki Michailidou
Introduction – David Goldgar and Kyriaki Michailidou (slides – presentation)
CCLR update BRIDGES/CARRIERS/UKB – Maria Zanti (slides – presentation)
UK approach – Clare Turnbull, Alice Garrett (slides – presentation)
Working towards a TP53 reduced penetrance model – Cristina Fortuno (slides – presentation)
Applying current VCEP criteria to reduced penetrance variants and ClinGen low-risk group advice – Mandy Spurdle (slides – presentation)
Co-segregation for reduced penetrance – Bing Feng (slides – presentation)
Family history analysis for reduced penetrance variants/genes – David Goldgar (slides – presentation)
Case-control and functional data for reduced penetrance variants – Maria Zanti (slides – presentation)
Population data for reduced penetrance variants – Sam Cotton (slides – presentation)
Approaches to calibrate a classification model for reduced penetrance variants, project proposal – Kyriaki Michailidou (slides – presentation)
Day 2: Splicing Working Group - Chairs Logan Walker and Sara Gutiérrez-Enríquez
Welcome – Sara and Logan (slides – presentation)
Evaluating the accuracy and utility of computational splicing prediction tools – George Wiggins (slides – presentation)
BRCA1 IVS18 splicing variants: update on last results and variant classification – Joanna Domènech Vivo/Sara Gutierrez-Enriquez (slides – presentation)
Project 7 extension ATM – Ada Esteban-Sánchez (slides – presentation)
Project 7 extension – CHEK2 – a project update and call for data – Petra Kleiblova (slides – presentation)
BRCA1 Δ11q splicing variants: Update on Project – Lidia Feliubadaló / Sara Gutiérrez-Enríquez
(slides – presentation)
BRCA1 IVS11 – General overview and update – Michael Parsons (slides – presentation)
Long-read RNASeq kConfab – Mads Thomassen
- Inge Søkilde Pedersen – PacBio long read seq analysis (slides – presentation)
- Anna-Lena Katzke – Long read seq analysis (slides – presentation)
- Louise Adel Jensen – Compilation of long read seq data (slides – presentation)
Functional analysis of alternative transcripts – Romy Mesman (slides – presentation)
Quantitative analysis of leaky splicing variants at the BRCA2 exon 13 donor site – Paolo Radice (slides – presentation)
ClinGen SVI Splicing subgroup – manuscript responses – Logan Walker (slides – presentation)
Admin, future meetings – Mandy, Maaike (slides – presentation)
Day 3: Functional Working Group - Chairs Maaike Vreeswijk & Zdenek Kleibl
Welcome – Maaike/Zdenek (slides – presentation)
Update Zdenek Kleibl – CHEK2gether (slides – presentation)
BRCA2 MAVE analysis and classification – Fergus Couch (please contact the presenter for more information)
Functional assay VUS in BRCA2-PALB2 binding domain – Muthiah Bose (Maria Rossing’s lab) (please contact the presenter for more information)
Site-saturation functional screens identify PALB2 missense variants associated with increased breast cancer risk – Haico van Attikum (please contact the presenter for more information)
Saturation Genome Editing of BRCA1: comparing functional effects across cell lines – Greg Findlay (slides – presentation)
ATM functional – Sean Tavtigian (slides – presentation)
Functional screen for ATM missense VUS – Paul Andreassen (University of Cincinnati) (please contact the presenter for more information)
Saturation genome editing of BRCA2 in mouse ES cells – Sounak Sahu (Sharan Shyam lab) (slides – presentation)
Day 3: MAVE session
Introductory comments – Fergus Couch (please contact the presenter for more information)
Theme 1: Cell models – Greg Findlay (slides – presentation)
Theme 2: Quantitative Validation Approaches – Clare Turnbull (slides – presentation)
Theme 3: Combining Assays – Alvaro Monteiro (slides – presentation)
Theme 4: Reduced Function/ Penetrance – Fergus Couch (please contact the presenter for more information)
Theme 5: Data “sign-off” for use in clinical variant interpretation – Clare Turnbull Sign-off comments (slides – presentation)
MAVE session – Fergus Couch Sign-off comments (please contact the presenter for more information)
Sign-off ENIGMA meeting (Mandy, Maaike)